For some reason folding@home doesn't always launch right unless you are in the folding@home directory so I created a small bash script that will allow users to issue a "fold" command that will start up a terminal with folding@home in alltray.
Download it here and edit it with your username where it says to, and then copy it to your /usr/bin directory
http://slightlyunstable.org/files/fold
Note: to use this you need to have alltray installed. If you don't run a simple: sudo apt-get install alltray
Have fun and happy folding

